| Premier Division | P | W | D | L | F | A | +/- | Pts |
| AFC Pegasus | 16 | 14 | 0 | 2 | 122 | 23 | 99 | 42 |
| Corecalona | 16 | 14 | 0 | 2 | 62 | 17 | 45 | 42 |
| Botolphs | 16 | 11 | 1 | 4 | 64 | 29 | 35 | 34 |
| FC Byair | 16 | 10 | 1 | 5 | 26 | 26 | 0 | 28 |
| CUSA | 16 | 6 | 2 | 8 | 24 | 51 | -27 | 23 |
| Feering Utd | 16 | 5 | 1 | 10 | 35 | 49 | -14 | 16 |
| Tolleshunt Darcy | 16 | 4 | 0 | 12 | 17 | 29 | -12 | 12 |
| Bayern Monkwick | 16 | 3 | 1 | 12 | 21 | 96 | -75 | 10 |
| Wivenhoe Old Boys | 16 | 2 | 0 | 14 | 18 | 69 | -51 | 6 |
| AFC Lexden | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 08/09/13 - Wivenhoe Old Boys failed to raise a side - match to Bayern Monkwick | ||||||||
| 22/09/13 - FC Byair played an ineligble player - match to CUSA | ||||||||
| 06/10/13 - Tolleshunt Darcy failed to raise a side - match to AFC Pegasus | ||||||||
| 13/10/13 - AFC Lexden failed to raise a side - match to FC Byair | ||||||||
| 28/10/13 - AFC Lexden withdrew from league - record expunged. | ||||||||
| 09/02/14 - Tolleshunt Darcy withdrew from league - and under normal circumstances, their record would be expunged and all matches played would be treated as void, according to league rule 12C. However, following confirmation with ECFA, at the time of their withdrawal Tolleshunt Darcy were participating in a division of nine teams, meaning they had a total of 16 matches for the season. They had played (or defaulted) 12 of these matches, a proportion of 75% of those available. As such, and in accordance with the second part of rule 12C, Botolphs (A), FC Byair (H & A) and Wivenhoe Old Boys (A) : points awarded to opponents. | ||||||||
| 23/02/14 - Bayern Monkwick withdrew from league - and under normal circumstances, their record would be expunged and all matches played would be treated as void, according to league rule 12C. However, following confirmation with ECFA, at the time of their withdrawal Bayern Monkwick were participating in a division of nine teams (as outstanding Darcy matches were awarded), meaning they had a total of 16 matches for the season. They had played (or defaulted) 13 of these matches, a proportion of over75% of those available. As such, and in accordance with the second part of rule 12C, CUSA (A) & FC Byair (H & A) : points awarded to opponents. | ||||||||
| Division 1 | P | W | D | L | F | A | +/- | Pts |
| Duckpond | 10 | 9 | 1 | 0 | 39 | 7 | 32 | 28 |
| Clarendon | 10 | 7 | 0 | 3 | 43 | 26 | 17 | 21 |
| AFC Pegasus Res | 10 | 4 | 2 | 4 | 28 | 27 | 1 | 14 |
| Real BTS | 10 | 4 | 1 | 5 | 29 | 28 | 1 | 13 |
| Elmstead Athletic | 10 | 2 | 0 | 8 | 19 | 48 | -29 | 6 |
| Ramsey Utd | 10 | 1 | 2 | 7 | 19 | 41 | -22 | 5 |
| Bayern Monkwick Res | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Quayside | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| St Edmunds | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| St Edmunds withdrawn - record expunged. | ||||||||
| Quayside withdrawn - record expunged. | ||||||||
| Bayern Monkwick Res withdrawn - record expunged. | ||||||||
| 15/09/13 - St Edmunds failed to raise a side - match to Bayern Monkwick Res | ||||||||
| 22/09/13 - St Edmunds failed to raise a side - match to Ramsey Utd | ||||||||
| 22/09/13 - Bayern Monkwick Res failed to raise a side - match to AFC Pegasus Res | ||||||||
| 29/09/13 - Bayern Monkwick Res failed to raise a side - match to Ramsey Utd | ||||||||
| 06/04/13 - Elmstead Athletic failed to raise a side - match to AFC Pegasus Res | ||||||||
  | ||||||||
| Division 2 | P | W | D | L | F | A | +/- | Pts |
| AFC Colchester | 16 | 14 | 1 | 1 | 63 | 24 | 39 | 43 |
| Marks Tey | 16 | 13 | 1 | 2 | 71 | 22 | 49 | 40 |
| Ramsey Mill | 16 | 8 | 3 | 5 | 47 | 38 | 9 | 27 |
| Colchester Villa | 16 | 7 | 3 | 6 | 58 | 37 | 21 | 26 |
| Copford | 16 | 7 | 2 | 7 | 34 | 37 | -3 | 23 |
| Fat Cat | 16 | 5 | 4 | 7 | 36 | 45 | -9 | 19 |
| Iceni Wanderers | 16 | 5 | 2 | 9 | 39 | 47 | -8 | 16 |
| Feering Utd Res | 16 | 4 | 2 | 10 | 46 | 69 | -23 | 14 |
| Stone Island | 16 | 0 | 0 | 16 | 13 | 88 | -75 | 0 |
| 20/10/13 : Iceni played ineligible player, Iceni deducted 1pt, match & 2 further pts awarded to Col. Villa | ||||||||
| 02/03/14 : Col.Villa failed to fulfil the double header against AFC Colchester. Points for both matches award to AFC | ||||||||
| Division 3 | P | W | D | L | F | A | +/- | Pts |
| Greenstead Social | 14 | 12 | 1 | 1 | 67 | 16 | 51 | 37 |
| Sunday Shrimpers | 14 | 11 | 1 | 2 | 73 | 13 | 60 | 34 |
| The Mill | 14 | 9 | 1 | 4 | 30 | 30 | 0 | 28 |
| Tollesbury Legion | 14 | 7 | 1 | 6 | 31 | 33 | -2 | 22 |
| FC Byair Res | 14 | 6 | 1 | 7 | 34 | 28 | 6 | 19 |
| Newtown Rovers | 14 | 5 | 1 | 8 | 27 | 43 | -16 | 16 |
| Pitchbury | 14 | 1 | 1 | 12 | 19 | 67 | -48 | 4 |
| Ramsey Mill Res | 14 | 1 | 1 | 12 | 18 | 69 | -51 | 4 |
| St Edmunds Res | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 24/11/14 - The Mill v FC Byair Res : Match abandoned, awarded to The Mill | ||||||||
| St Edmunds Res withdrew before the season began. | ||||||||
| Division 4 | P | W | D | L | F | A | +/- | Pts |
| Brightlingsea Regent | 14 | 12 | 1 | 1 | 57 | 14 | 43 | 37 |
| Bridgelink | 14 | 10 | 2 | 2 | 57 | 19 | 38 | 32 |
| Saint Johns | 14 | 7 | 2 | 5 | 29 | 25 | 4 | 26 |
| Harwich & Wix | 14 | 5 | 4 | 5 | 44 | 34 | 10 | 19 |
| City Saints | 14 | 4 | 3 | 7 | 24 | 31 | -7 | 15 |
| Fox & Fiddler | 14 | 5 | 4 | 5 | 35 | 36 | -1 | 13 |
| Fordham Athletic | 14 | 2 | 2 | 10 | 26 | 57 | -31 | 11 |
| Wimpole 2000 | 14 | 1 | 2 | 11 | 13 | 69 | -56 | 5 |
| Polstead | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| 29/09/13 : Fox & Fiddler played ineligible player - match to St Johns. | ||||||||
| 01/12/13 : Fox & Fiddler played ineligible player - match to Fordham Ath. | ||||||||
| Polstead withdrew before the season began. | ||||||||
